20 citations · 40 across the 19 of their papers we have counts for
10 papers · 1 filter
Orchard Networks are Trees with Additional Horizontal Arcs
Leo van Iersel, Remie Janssen, Mark Jones +1
Phylogenetic networks are used in biology to represent evolutionary histories. The class of orchard phylogenetic networks was recently introduced for their computational benefits,…
Connectedness of Unit Distance Subgraphs Induced by Closed Convex Sets
Remie Janssen, Leonie van Steijn
The unit distance graph is the infinite graph whose nodes are points in , with an edge between two points if the Euclidean distance between these…
Level- networks from shortest and longest distances
Katharina T. Huber, Leo van Iersel, Remie Janssen +3
Recently it was shown that a certain class of phylogenetic networks, called level- networks, cannot be reconstructed from their associated distance matrices. In this paper, we s…
A Unifying Characterization of Tree-based Networks and Orchard Networks using Cherry Covers
Leo van Iersel, Remie Janssen, Mark Jones +2
Phylogenetic networks are used to study evolutionary relationships between species in biology. Such networks are often categorized into classes by their topological features, which…
The Burning Number of Directed Graphs: Bounds and Computational Complexity
Remie Janssen
The burning number of a graph was recently introduced by Bonato et al. Although they mention that the burning number generalises naturally to directed graphs, no further research o…
Rearrangement operations on unrooted phylogenetic networks
Remie Janssen, Jonathan Klawitter
Rearrangement operations transform a phylogenetic tree into another one and hence induce a metric on the space of phylogenetic trees. Popular operations for unrooted phylogenetic t…
On Cherry-picking and Network Containment
Remie Janssen, Yukihiro Murakami
Phylogenetic networks are used to represent evolutionary scenarios in biology and linguistics. To find the most probable scenario, it may be necessary to compare candidate networks…
Reconstructing Tree-Child Networks from Reticulate-Edge-Deleted Subnetworks
Yukihiro Murakami, Leo van Iersel, Remie Janssen +2
Network reconstruction lies at the heart of phylogenetic research. Two well studied classes of phylogenetic networks include tree-child networks and level- networks. In a tree-c…
Heading in the right direction? Using head moves to traverse phylogenetic network space
Remie Janssen
Head moves are a type of rearrangement moves for phylogenetic networks. They have mostly been studied as part of more encompassing types of moves, such as rSPR moves. Here, we stud…
Exploring the tiers of rooted phylogenetic network space using tail moves
Remie Janssen, Mark Jones, Péter L. Erdős +2
Popular methods for exploring the space of rooted phylogenetic trees use rearrangement moves such as rNNI (rooted Nearest Neighbour Interchange) and rSPR (rooted Subtree Prune and…