175 citations · 925 across the 31 of their papers we have counts for
31 papers
Edge usage, motifs and regulatory logic for cell cycling genetic networks
M. Zagorski, A. Krzywicki, O. C. Martin
The cell cycle is a tightly controlled process, yet its underlying genetic network shows marked differences across species. Which of the associated structural features follow solel…
Motifs emerge from function in model gene regulatory networks
Z. Burda, A. Krzywicki, O. C. Martin +1
Gene regulatory networks arise in all living cells, allowing the control of gene expression patterns. The study of their topology has revealed that certain subgraphs of interaction…
Distribution of essential interactions in model gene regulatory networks under mutation-selection balance
Z. Burda, A. Krzywicki, O. C. Martin +1
Gene regulatory networks typically have low in-degrees, whereby any given gene is regulated by few of the genes in the network. They also tend to have broad distributions for the o…
Sparse essential interactions in model networks of gene regulation
Z. Burda, A. Krzywicki, O. C. Martin +1
Gene regulatory networks typically have low in-degrees, whereby any given gene is regulated by few of the genes in the network. What mechanisms might be responsible for these low i…
Adaptive networks of trading agents
Z. Burda, A. Krzywicki, O. C. Martin
Multi-agent models have been used in many contexts to study generic collective behavior. Similarly, complex networks have become very popular because of the diversity of growth rul…
Network of inherent structures in spin glasses: scaling and scale-free distributions
Z. Burda, A. Krzywicki, O. C. Martin
The local minima (inherent structures) of a system and their associated transition links give rise to a network. Here we consider the topological and distance properties of such a…