193 citations · 661 across the 6 of their papers we have counts for
5 papers
Folding Trp-cage to NMR resolution native structure using a coarse-grained model
Feng Ding, Sergey V. Buldyrev, Nikolay V. Dokholyan
We develop a coarse-grained protein model with a simplified amino acid interaction potential. We perform discrete molecular dynamics folding simulations of a small 20 residue prote…
Molecular Dynamics Simulation of Amyloid Beta Dimer Formation
B. Urbanc, L. Cruz, F. Ding +5
Recent experiments with amyloid-beta (Abeta) peptide suggest that formation of toxic oligomers may be an important contribution to the onset of Alzheimer's disease. The toxicity of…
Discrete molecular dynamics simulations of peptide aggregation
S. Peng, F. Ding, B. Urbanc +4
We study the aggregation of peptides using the discrete molecular dynamics simulations. At temperatures above the alpha-helix melting temperature of a single peptide, the model pep…
Folding of Cu, Zn superoxide dismutase and Familial Amyotrophic Lateral Sclerosis
Sagar D. Khare, Feng Ding, Nikolay V. Dokholyan
Cu,Zn superoxide dismutase (SOD1) has been implicated in the familial form of the neurodegenerative disease Amyotrophic Lateral Sclerosis (ALS). It has been suggested that mutant m…
Multiple Folding Pathways of the SH3 domain
J. M. Borreguero, F. Ding, S. V. Buldyrev +2
Experimental observations suggest that proteins follow different pathways under different environmental conditions. We perform molecular dynamics simulations of a model of the SH3…