2 papers
cs.LG2025
EnerBridge-DPO: Energy-Guided Protein Inverse Folding with Markov Bridges and Direct Preference Optimization
Dingyi Rong, Haotian Lu, Wenzhuo Zheng +3
Designing protein sequences with optimal energetic stability is a key challenge in protein inverse folding, as current deep learning methods are primarily trained by maximizing seq…
q-bio.QM2024
Autoregressive Enzyme Function Prediction with Multi-scale Multi-modality Fusion
Dingyi Rong, Wenzhuo Zheng, Bozitao Zhong +3
Accurate prediction of enzyme function is crucial for elucidating biological mechanisms and driving innovation across various sectors. Existing deep learning methods tend to rely s…