1 citations · 1 across the 2 of their papers we have counts for
2 papers
q-bio.BM2024★ 1 cited
Messenger RNA Design via Expected Partition Function and Continuous Optimization
Ning Dai, Wei Yu Tang, Tianshuo Zhou +2
The tasks of designing RNAs are discrete optimization problems, and several versions of these problems are NP-hard. As an alternative to commonly used local search methods, we form…
q-bio.BM2023
LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs
Sizhen Li, Ning Dai, He Zhang +3
The classical Sankoff algorithm for the simultaneous folding and alignment of homologous RNA sequences is highly influential, but it suffers from two major limitations in efficienc…