2 papers
q-bio.QM2026
Probing and steering biology across Boltz-1s trunk-diffusion boundary
Piotr Jedryszek, Tongmeng Xie, Adam Winnifrith +5
AlphaFold3-class structure predictors pair a representational trunk, which processes sequence and context, with a diffusion module, which generates atomic coordinates. How biologic…
q-bio.BM2026
Retrieval and competition: how a protein foundation model starts a protein
Piotr Jedryszek, Oliver M. Crook
Protein language models are increasingly used to guide experimental and clinical decisions, yet it is often unclear whether a confident prediction reflects recognition of biologica…