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cond-mat.soft2007★ 14 cited
How a Vicinal Layer of Solvent Modulates the Dynamics of Proteins
C. Atilgan, A. O. Aykut, A. R. Atilgan
The dynamics of a folded protein is studied in water and glycerol at a series of temperatures below and above their respective dynamical transition. The system is modeled in two di…
cond-mat.soft2003
Machinery of Functional Dynamics in Native Proteins
Canan Baysal, Ali Rana Atilgan
We provide evidence that the energy landscapes of folded proteins do not shift with temperature, but the onset of functional dynamics is associated with its effective sampling. The…
cond-mat.soft2003
Small-world communication of residues and significance for protein dynamics
Ali Rana Atilgan, Pelin Akan, Canan Baysal
It is not merely the position of residues that are of utmost importance in protein function and stability, but the interactions between them. We illustrate, by using a network cons…