most citedProtein Language Models and Structure Prediction: Connection and Progression

21 citations · 22 across the 3 of their papers we have counts for

collaborators

14 papers

cs.CL2024

CMoralEval: A Moral Evaluation Benchmark for Chinese Large Language Models

Linhao Yu, Yongqi Leng, Yufei Huang +9

What a large language model (LLM) would respond in ethically relevant context? In this paper, we curate a large benchmark CMoralEval for morality evaluation of Chinese LLMs. The da…

q-bio.BM20242 cited

Deep Lead Optimization: Leveraging Generative AI for Structural Modification

Odin Zhang, Haitao Lin, Hui Zhang +7

The idea of using deep-learning-based molecular generation to accelerate discovery of drug candidates has attracted extraordinary attention, and many deep generative models have be…

q-bio.BM20245 cited

FoldToken: Learning Protein Language via Vector Quantization and Beyond

Zhangyang Gao, Cheng Tan, Jue Wang +3

Is there a foreign language describing protein sequences and structures simultaneously? Protein structures, represented by continuous 3D points, have long posed a challenge due to…

cs.CL2024

OpenEval: Benchmarking Chinese LLMs across Capability, Alignment and Safety

Chuang Liu, Linhao Yu, Jiaxuan Li +11

The rapid development of Chinese large language models (LLMs) poses big challenges for efficient LLM evaluation. While current initiatives have introduced new benchmarks or evaluat…

q-bio.QM20243 cited

Enhancing Protein Predictive Models via Proteins Data Augmentation: A Benchmark and New Directions

Rui Sun, Lirong Wu, Haitao Lin +2

Augmentation is an effective alternative to utilize the small amount of labeled protein data. However, most of the existing work focuses on design-ing new architectures or pre-trai…

cs.LG202410 cited

MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding

Lirong Wu, Yijun Tian, Yufei Huang +4

Protein-Protein Interactions (PPIs) are fundamental in various biological processes and play a key role in life activities. The growing demand and cost of experimental PPI assays r…