87 citations · 715 across the 29 of their papers we have counts for
8 papers · 1 filter
Probing the Mechanisms of Fibril Formation Using Lattice Models
Mai Suan Li, D. K. Klimov, J. E. Straub +1
Using exhaustive Monte Carlo simulations we study the kinetics and mechanism of fibril formation using lattice models as a function of temperature and the number of chains. While t…
New method for deciphering free energy landscape of three-state proteins
Mai Suan Li, A. M. Gabovich, A. I. Voitenko
We have developed a new simulation method to estimate the distance between the native state and the first transition state, and the distance between the intermediate state and the…
New force replica exchange method and protein folding pathways probed by force-clamp technique
Maksim Kouza, Chin-Kun Hu, Mai Suan Li
We have developed a new extended replica exchange method to study thermodynamics of a system in the presence of external force. Our idea is based on the exchange between different…
Effect of finite size on cooperativity and rates of protein folding
Maksim Kouza, Mai Suan Li, Edward P. O'Brien +2
We analyze the dependence of cooperativity of the thermal denaturation transition and folding rates of globular proteins on the number of amino acid residues, , using lattice mo…
Refolding upon force quench and pathways of mechanical and thermal unfolding of ubiquitin
Mai Suan Li, Maksim Kouza, Chin-Kun Hu
The refolding from stretched initial conformations of ubiquitin (PDB ID: 1ubq) under the quenched force is studied using the Go model and the Langevin dynamics. It is shown that th…
Finite size effects on calorimetric cooperativity of two-state proteins
Mai Suan Li, D. K. Klimov, D. Thirumalai
Finite size effects on the calorimetric cooperatity of the folding-unfolding transition in two-state proteins are considered using the Go lattice models with and without side chain…