103 citations · 138 across the 6 of their papers we have counts for
4 papers · 1 filter
Efficient stochastic simulation of gene regulatory networks using hybrid models of transcriptional bursting
Mathilde Gaillard, Ulysse Herbach
Single-cell data reveal the presence of biological stochasticity between cells of identical genome and environment, in particular highlighting the transcriptional bursting phenomen…
Harissa: stochastic simulation and inference of gene regulatory networks based on transcriptional bursting
Ulysse Herbach
Gene regulatory networks, as a powerful abstraction for describing complex biological interactions between genes through their expression products within a cell, are often regarded…
Gene regulatory network inference from single-cell data using a self-consistent proteomic field
Ulysse Herbach
The well-known issue of reconstructing regulatory networks from gene expression measurements has been somewhat disrupted by the emergence and rapid development of single-cell data.…
Inferring gene regulatory networks from single-cell data: a mechanistic approach
Ulysse Herbach, Arnaud Bonnaffoux, Thibault Espinasse +1
The recent development of single-cell transcriptomics has enabled gene expression to be measured in individual cells instead of being population-averaged. Despite this considerable…