1 citations · 1 across the 2 of their papers we have counts for
5 papers
Cayley Graphs of Semigroups Applied to Atom Tracking in Chemistry
Nikolai Nøjgaard, Walter Fontana, Marc Hellmuth +1
While atom tracking with isotope-labeled compounds is an essential and sophisticated wet-lab tool in order to, e.g., illuminate reaction mechanisms, there exists only a limited amo…
Combining Orthology and Xenology Data in a Common Phylogenetic Tree
Marc Hellmuth, Mira Michel, Nikolai N. Nøjgaard +2
A rooted tree with vertex labels and set-valued edge labels defines maps and on the pairs of leaves of by setting if the last com…
Graph Transformation for Enzymatic Mechanisms
Jakob L. Andersen, Rolf Fagerberg, Christoph Flamm +5
Motivation: The design of enzymes is as challenging as it is consequential for making chemical synthesis in medical and industrial applications more efficient, cost-effective and e…
A Graph-Based Tool to Embed the π-Calculus into a Computational DPO Framework
Jakob Lykke Andersen, Marc Hellmuth, Daniel Merkle +2
Graph transformation approaches have been successfully used to analyse and design chemical and biological systems. Here we build on top of a DPO framework, in which molecules are m…
Forbidden Time Travel: Characterization of Time-Consistent Tree Reconciliation Maps
Nikolai Nøjgaard, Manuela Geiß, Peter F. Stadler +3
In the absence of horizontal gene transfer it is possible to reconstruct the history of gene families from empirically determined orthology relations, which are equivalent to event…