601 citations · 602 across the 3 of their papers we have counts for
4 papers
LAFA: A Framework for Reproducible Longitudinal Assessment of Protein Function Annotation Models
An Phan, Yanli Wang, Frimpong Boadu +3
Motivation: Protein function prediction is a challenging task and an open problem in computational biology. The Critical Assessment of protein Function Annotation (CAFA) is a trien…
Description Logic EL++ Embeddings with Intersectional Closure
Xi Peng, Zhenwei Tang, Maxat Kulmanov +2
Many ontologies, in particular in the biomedical domain, are based on the Description Logic EL++. Several efforts have been made to interpret and exploit EL++ ontologies by distrib…
EL Embeddings: Geometric construction of models for the Description Logic EL ++
Maxat Kulmanov, Wang Liu-Wei, Yuan Yan +1
An embedding is a function that maps entities from one algebraic structure into another while preserving certain characteristics. Embeddings are being used successfully for mapping…
DeepGO: Predicting protein functions from sequence and interactions using a deep ontology-aware classifier
Maxat Kulmanov, Mohammed Asif Khan, Robert Hoehndorf
A large number of protein sequences are becoming available through the application of novel high-throughput sequencing technologies. Experimental functional characterization of the…