82 citations · 193 across the 24 of their papers we have counts for
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cs.LG2022
CoViT: Real-time phylogenetics for the SARS-CoV-2 pandemic using Vision Transformers
Zuher Jahshan, Can Alkan, Leonid Yavits
Real-time viral genome detection, taxonomic classification and phylogenetic analysis are critical for efficient tracking and control of viral pandemics such as Covid-19. However, t…
eess.SY2022★ 12 cited
FiltPIM: In-Memory Filter for DNA Sequencing
Marcel Khalifa, Rotem Ben-Hur, Ronny Ronen +3
Aligning the entire genome of an organism is a compute-intensive task. Pre-alignment filters substantially reduce computation complexity by filtering potential alignment locations.…