19 citations · 40 across the 8 of their papers we have counts for
10 papers
PureMagic: A Dynamic Scheduler for Lattice Surgery
Steven Hofmeyr, Mathias Weiden, Justin Kalloor +2
Fault-tolerant quantum computation on surface codes requires magic states for universal computation. Traditional distillation factories deliver magic states deterministically but c…
High-Performance Filters For GPUs
Hunter McCoy, Steven Hofmeyr, Katherine Yelick +1
Filters approximately store a set of items while trading off accuracy for space-efficiency and can address the limited memory on accelerators, such as GPUs. However, there is a lac…
Understanding the Power of Evolutionary Computation for GPU Code Optimization
Jhe-Yu Liou, Muaaz Awan, Steven Hofmeyr +2
Achieving high performance for GPU codes requires developers to have significant knowledge in parallel programming and GPU architectures, and in-depth understanding of the applicat…
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment
Alberto Zeni, Giulia Guidi, Marquita Ellis +6
Pairwise sequence alignment is one of the most computationally intensive kernels in genomic data analysis, accounting for more than 90% of the runtime for key bioinformatics applic…
The Parallelism Motifs of Genomic Data Analysis
Katherine Yelick, Aydin Buluc, Muaaz Awan +11
Genomic data sets are growing dramatically as the cost of sequencing continues to decline and small sequencing devices become available. Enormous community databases store and shar…
Extreme Scale De Novo Metagenome Assembly
Evangelos Georganas, Rob Egan, Steven Hofmeyr +6
Metagenome assembly is the process of transforming a set of short, overlapping, and potentially erroneous DNA segments from environmental samples into the accurate representation o…
Extreme-Scale De Novo Genome Assembly
Evangelos Georganas, Steven Hofmeyr, Rob Egan +4
De novo whole genome assembly reconstructs genomic sequence from short, overlapping, and potentially erroneous DNA segments and is one of the most important computations in modern…
Modeling Internet-Scale Policies for Cleaning up Malware
Steven Hofmeyr, Tyler Moore, Stephanie Forrest +2
An emerging consensus among policy makers is that interventions undertaken by Internet Service Providers are the best way to counter the rising incidence of malware. However, asses…
Internet Topology over Time
Benjamin Edwards, Steven Hofmeyr, George Stelle +1
There are few studies that look closely at how the topology of the Internet evolves over time; most focus on snapshots taken at a particular point in time. In this paper, we invest…
Beyond the Blacklist: Modeling Malware Spread and the Effect of Interventions
Benjamin Edwards, Tyler Moore, George Stelle +2
Malware spread among websites and between websites and clients is an increasing problem. Search engines play an important role in directing users to websites and are a natural cont…