247 citations · 282 across the 5 of their papers we have counts for
5 papers · 1 filter
Modeling Gel Swelling Equilibrium in Mean-Field: From explicit Models to Poisson-Boltzmann
Jonas Landsgesell, David Sean, Patrick Kreissl +2
We develop a double mean-field theory for charged macrogels immersed in electrolyte solutions in the spirit of the cell model approach. We first demonstrate that the equilibrium sa…
ESPResSo 4.0 -- An Extensible Software Package for Simulating Soft Matter Systems
Florian Weik, Rudolf Weeber, Kai Szuttor +7
ESPResSo 4.0 is an extensible simulation package for research on soft matter. This versatile molecular dynamics program was originally developed for coarse-grained simulations of c…
Reducing the variance in the translocation times by pre-stretching the polymer
Hendrick W. de Haan, David Sean, Gary W. Slater
Langevin Dynamics simulations of polymer translocation are performed where the polymer is stretched via two opposing forces applied on the first and last monomer before and during…
Rotation-induced macromolecular spooling of DNA
Tyler N. Shendruk, David Sean, Daniel J. Berard +5
Genetic information is stored in a linear sequence of base-pairs; however, thermal fluctuations and complex DNA conformations such as folds and loops make it challenging to order g…
Using a Péclet Number for the Translocation of Polymer through a Nanopore to Tune Coarse-Grained Simulations to Experimental Conditions
Hendrick W. de Haan, David Sean, Gary W. Slater
Coarse-grained simulations are often employed to study the translocation of DNA through a nanopore. The majority of these studies investigate the translocation process in a relativ…