activity
20152021
most citedAutomated Discovery of Elementary Chemical Reaction Steps Using Freezing String and Berny Optimization Methods

227 citations · 492 across the 6 of their papers we have counts for

collaborators

6 papers

physics.chem-ph2021★ 50 cited

GeoMol: Torsional Geometric Generation of Molecular 3D Conformer Ensembles

Octavian-Eugen Ganea, Lagnajit Pattanaik, Connor W. Coley +4

Prediction of a molecule's 3D conformer ensemble from the molecular graph holds a key role in areas of cheminformatics and drug discovery. Existing generative models have several d…

q-bio.QM2020★ 16 cited

Message Passing Networks for Molecules with Tetrahedral Chirality

Lagnajit Pattanaik, Octavian-Eugen Ganea, Ian Coley +3

Molecules with identical graph connectivity can exhibit different physical and biological properties if they exhibit stereochemistry-a spatial structural characteristic. However, m…

physics.chem-ph2020★ 192 cited

Transfer learning for solvation free energies: from quantum chemistry to experiments

Florence H. Vermeire, William H. Green

Data scarcity, bias, and experimental noise are all frequently encountered problems in the application of deep learning to chemical and material science disciplines. Transfer learn…

cs.LG2019★ 6 cited

Evaluating Scalable Uncertainty Estimation Methods for DNN-Based Molecular Property Prediction

Gabriele Scalia, Colin A. Grambow, Barbara Pernici +2

Advances in deep neural network (DNN) based molecular property prediction have recently led to the development of models of remarkable accuracy and generalization ability, with gra…

physics.chem-ph2017★ 1 cited

An Autoignition Study of iso-Butanol: Experiments and Modeling

Bryan W. Weber, Shamel Merchant, Chih-Jen Sung +1

The autoignition delays of iso-butanol, oxygen, and nitrogen mixtures have been measured in a heated rapid compression machine (RCM). At compressed pressures of 15 and 30 bar, over…

physics.chem-ph2015★ 227 cited

Automated Discovery of Elementary Chemical Reaction Steps Using Freezing String and Berny Optimization Methods

Yury V. Suleimanov, William H. Green

We present a simple protocol which allows fully automated discovery of elementary chemical reaction steps using in cooperation single- and double-ended transition-state optimizatio…