14 citations · 58 across the 14 of their papers we have counts for
5 papers · 1 filter
Can all-atom protein dynamics be reconstructed from the knowledge of C-alpha time evolution?
Jiaojiao Liu, Jin Dai, Jianfeng He +2
We inquire to what extent protein peptide plane and side chain dynamics can be reconstructed from knowledge of C-alpha dynamics. Due to lack of experimental data we analyze all ato…
Virtual reality analysis of intrinsic protein geometry with applications to cis peptide planes
Yanzhen Hou, Jin Dai, Nevena Ilieva +3
A protein is traditionally visualised as a piecewise linear discrete curve, and its geometry is conventionally characterised by the extrinsically determined Ramachandran angles. Ho…
Towards multistage modelling of protein dynamics with monomeric Myc oncoprotein as an example
Jiaojiao Liu, Jin Dai, Jianfeng He +2
We propose to combine a mean field approach with all atom molecular dynamics into a multistage algorithm that can model protein folding and dynamics over very long time periods yet…
Bloch spin waves and emergent structure in protein folding with HIV envelope glycoprotein as an example
Jin Dai, Antti J. Niemi, Jianfeng He +2
We inquire how structure emerges during the process of protein folding. For this we scrutinise col- lective many-atom motions during all-atom molecular dynamics simulations. We int…
Aspects of structural landscape of human islet amyloid polypeptide
Jianfeng He, Jin Dai, Jing Li +2
The human islet amyloid polypeptide (hIAPP) co-operates with insulin to maintain glycemic balance. It also constitutes the amyloid plaques that aggregate in the pancreas of type-II…