1 citations · 2 across the 2 of their papers we have counts for
4 papers · 1 filter
New advances in the automation of context-aware information selection and guided model assembly
Yasmine Ahmed, Adam A Butchy, Khaled Sayed +2
The automated assembly and extension of dynamic network models using information extracted from literature are challenging due to the amount and inconsistency in published literatu…
A Faster DiSH: Hardware Implementation of a Discrete Cell Signaling Network Simulator
Kevin Gilboy, Khaled Sayed, Niteesh Sundaram +2
Development of fast methods to conduct in silico experiments using computational models of cellular signaling is a promising approach toward advances in personalized medicine. Howe…
Recipes for Translating Big Data Machine Reading to Executable Cellular Signaling Models
Khaled Sayed, Cheryl A. Telmer, Adam A. Butchy +1
With the tremendous increase in the amount of biological literature, developing automated methods for extracting big data from papers, building models and explaining big mechanisms…
DiSH Simulator: Capturing Dynamics of Cellular Signaling with Heterogeneous Knowledge
Khaled Sayed, Yu-Hsin Kuo, Anuva Kulkarni +1
We present DiSH-Sim, a simulator for large discrete models of biological signal transduction pathways, capable of simulating networks with multi-valued elements in both determinist…