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cs.DC2024★ 1 cited
gpuPairHMM: High-speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs
Bertil Schmidt, Felix Kallenborn, Alexander Wichmann +2
The continually increasing volume of DNA sequence data has resulted in a growing demand for fast implementations of core algorithms. Computation of pairwise alignments between cand…
cs.DC2020
WarpCore: A Library for fast Hash Tables on GPUs
Daniel Jünger, Robin Kobus, André Müller +4
Hash tables are ubiquitous. Properties such as an amortized constant time complexity for insertion and querying as well as a compact memory layout make them versatile associative d…