3 citations · 5 across the 5 of their papers we have counts for
5 papers
Automating Knowledge-Driven Model Recommendation: Methodology, Evaluation, and Key Challenges
Adam A. Butchy, Cheryl A. Telmer, Natasa Miskov-Zivanov
There is significant interest in using existing repositories of biological entities, relationships, and models to automate biological model assembly and extension. Current methods…
New advances in the automation of context-aware information selection and guided model assembly
Yasmine Ahmed, Adam A Butchy, Khaled Sayed +2
The automated assembly and extension of dynamic network models using information extracted from literature are challenging due to the amount and inconsistency in published literatu…
ACCORDION: Clustering and Selecting Relevant Data for Guided Network Extension and Query Answering
Yasmine Ahmed, Cheryl Telmer, Natasa Miskov-Zivanov
Querying new information from knowledge sources, in general, and published literature, in particular, aims to provide precise and quick answers to questions raised about a system u…
Methods to Expand Cell Signaling Models using Automated Reading and Model Checking
Kai-Wen Liang, Qinsi Wang, Cheryl Telmer +3
Biomedical research results are being published at a high rate, and with existing search engines, the vast amount of published work is usually easily accessible. However, reproduci…
Recipes for Translating Big Data Machine Reading to Executable Cellular Signaling Models
Khaled Sayed, Cheryl A. Telmer, Adam A. Butchy +1
With the tremendous increase in the amount of biological literature, developing automated methods for extracting big data from papers, building models and explaining big mechanisms…