105 citations · 474 across the 15 of their papers we have counts for
15 papers
Crowding breaks the forward/backward symmetry of transition times in biased random walks
Jaeoh Shin, Alexander M. Berezhkovskii, Anatoly B. Kolomeisky
Microscopic mechanisms of natural processes are frequently understood in terms of random walk models by analyzing local particle transitions. This is because these models properly…
Asymmetry of forward/backward transition times as a non-equilibrium measure of complexity of microscopic mechanisms
Jaeoh Shin, Anatoly B. Kolomeisky
In one-dimensional random walks, the waiting time for each direction transitions is the same, even in the presence of bias, as a consequence of the microscopic-reversibility. We st…
The Effect of Obstacles in Multi-Site Protein Target Search with DNA Looping
Cayke Felipe, Jaeoh Shin, Yulia Loginova +1
Many fundamental biological processes are regulated by protein-DNA complexes called {\it synaptosomes}, which possess multiple interaction sites. Despite the critical importance of…
Target search on DNA by interacting molecules: First-passage approach
Jaeoh Shin, Anatoly B. Kolomeisky
Gene regulation is one of the most important fundamental biological processes in living cells. It involves multiple protein molecules that locate specific sites on DNA and assemble…
Facilitation of DNA loop formation by protein-DNA non-specific interactions
Jaeoh Shin, Anatoly B. Kolomeisky
Complex DNA topological structures, including polymer loops, are frequently observed in biological processes when protein molecules simultaneously bind to several distant sites on…
Molecular search with conformational change: One-dimensional discrete-state stochastic model
Jaeoh Shin, Anatoly B. Kolomeisky
Molecular search phenomena are observed in a variety of chemical and biological systems. During the search the participating particles frequently move in complex inhomogeneous envi…