4 papers
Synaptic Cleft Segmentation in Non-Isotropic Volume Electron Microscopy of the Complete Drosophila Brain
Larissa Heinrich, Jan Funke, Constantin Pape +2
Neural circuit reconstruction at single synapse resolution is increasingly recognized as crucially important to decipher the function of biological nervous systems. Volume electron…
Joint Deformable Registration of Large EM Image Volumes: A Matrix Solver Approach
Khaled Khairy, Gennady Denisov, Stephan Saalfeld
Large electron microscopy image datasets for connectomics are typically composed of thousands to millions of partially overlapping two-dimensional images (tiles), which must be reg…
The Candidate Multi-Cut for Cell Segmentation
Jan Funke, Chong Zhang, Tobias Pietzsch +1
Two successful approaches for the segmentation of biomedical images are (1) the selection of segment candidates from a merge-tree, and (2) the clustering of small superpixels by so…
Deep Learning for Isotropic Super-Resolution from Non-Isotropic 3D Electron Microscopy
Larissa Heinrich, John A. Bogovic, Stephan Saalfeld
The most sophisticated existing methods to generate 3D isotropic super-resolution (SR) from non-isotropic electron microscopy (EM) are based on learned dictionaries. Unfortunately,…