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physics.comp-ph2026
Estimating Full Path Lengths and Kinetics from Partial Path Transition Interface Sampling Simulations
Wouter Vervust, Elias Wils, Sina Safaei +2
Assessing the time scale of biological processes using molecular dynamics (MD) simulations with sufficient statistical accuracy is a challenging task, as processes are often rare a…
physics.comp-ph2022★ 12 cited
Exchanging replicas with unequal cost, infinitely and permanently
Sander Roet, Daniel T. Zhang, Titus S. van Erp
We developed a replica exchange method that is effectively parallelizable even if the computational cost of the Monte Carlo moves in the parallel replicas are considerably differen…