58 citations · 139 across the 7 of their papers we have counts for
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q-bio.BM2017★ 24 cited
Structural entanglements in protein complexes
Yani Zhao, Mateusz Chwastyk, Marek Cieplak
We consider multi-chain protein native structures and propose a criterion that determines whether two chains in the system are entangled or not. The criterion is based on the behav…
q-bio.BM2017
Topological transformations in proteins: effects of heating and proximity of an interface
Yani Zhao, Mateusz Chwastyk, Marek Cieplak
Using a structure-based coarse-grained model of proteins, we study the mechanism of unfolding of knotted proteins through heating. We find that the dominant mechanisms of unfolding…