58 citations · 139 across the 7 of their papers we have counts for
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cond-mat.soft2024★ 8 cited
Contact-based molecular dynamics of structured and disordered proteins in a coarse-grained model: fixed contacts, switchable contacts and those described by pseudo-improper-dihedral angles
Łukasz Mioduszewski, Jakub Bednarz, Mateusz Chwastyk +1
We present a coarse-grained C-based protein model that can be used to simulate structured, intrinsically disordered and partially disordered proteins. We use a Go-like potential…
cond-mat.soft2023★ 1 cited
The GōMartini approach: Revisiting the concept of contact maps and the modelling of protein complexes
Luis F. Cofas-Vargas, Rodrigo A. Moreira, Simón Poblete +2
We present a review of a series of contact maps for the determination of native interactions in proteins and nucleic acids based on a distance-threshold. Such contact maps are most…