39 citations · 47 across the 5 of their papers we have counts for
5 papers
Gain-loss-duplication models on a phylogeny: exact algorithms for computing the likelihood and its gradient
Miklos Csuros
Gene gain-loss-duplication models are commonly based on continuous-time birth-death processes. Employed in a phylogenetic context, such models have been increasingly popular in stu…
A linear-time algorithm for finding the longest segment which scores above a given threshold
Miklós Csűrös
This paper describes a linear-time algorithm that finds the longest stretch in a sequence of real numbers (``scores'') in which the sum exceeds an input parameter. The algorithm al…
A probabilistic model for gene content evolution with duplication, loss, and horizontal transfer
Miklós Csűrös, István Miklós
We introduce a Markov model for the evolution of a gene family along a phylogeny. The model includes parameters for the rates of horizontal gene transfer, gene duplication, and gen…
Clone-array pooled shotgun mapping and sequencing: design and analysis of experiments
Miklós Csürös, Bingshan Li, Aleksandar Milosavljevic
This paper studies sequencing and mapping methods that rely solely on pooling and shotgun sequencing of clones. First, we scrutinize and improve the recently proposed Clone-Array P…
Provably Fast and Accurate Recovery of Evolutionary Trees through Harmonic Greedy Triplets
Miklos Csuros, Ming-Yang Kao
We give a greedy learning algorithm for reconstructing an evolutionary tree based on a certain harmonic average on triplets of terminal taxa. After the pairwise distances between t…