activity
20172022
most citedSimulation and inference algorithms for stochastic biochemical reaction networks: from basic concepts to state-of-the-art

102 citations · 207 across the 7 of their papers we have counts for

collaborators
Showing physics.bio-phShow all

6 papers · 1 filter

physics.bio-ph2021

Mean exit time for diffusion on irregular domains

Matthew J Simpson, Daniel J Vandenheuvel, Joshua M Wilson +2

Many problems in physics, biology, and economics depend upon the duration of time required for a diffusing particle to cross a boundary. As such, calculations of the distribution o…

physics.bio-ph2020

Profile likelihood analysis for a stochastic model of diffusion in heterogeneous media

Matthew J Simpson, Alexander P Browning, Christopher Drovandi +3

We compute profile likelihoods for a stochastic model of diffusive transport motivated by experimental observations of heat conduction in layered skin tissues. This process is mode…

physics.bio-ph2020

Diffusion in heterogeneous discs and spheres: new closed-form expressions for exit times and homogenization formulae

Elliot J. Carr, Jacob M. Ryan, Matthew J. Simpson

Mathematical models of diffusive transport underpin our understanding of chemical, biochemical and biological transport phenomena. Analysis of such models often focusses on relativ…

physics.bio-ph201955 cited

Hole-closing model reveals exponents for nonlinear degenerate diffusivity functions in cell biology

Scott W McCue, Wang Jin, Timothy J Moroney +3

Continuum mathematical models for collective cell motion normally involve reaction-diffusion equations, such as the Fisher-KPP equation, with a linear diffusion term to describe ce…

physics.bio-ph2018

New homogenization approaches for stochastic transport through heterogeneous media

Elliot J. Carr, Matthew J. Simpson

The diffusion of molecules in complex intracellular environments can be strongly influenced by spatial heterogeneity and stochasticity. A key challenge when modelling such processe…

physics.bio-ph2018

Rapid calculation of maximum particle lifetime for diffusion in complex geometries

Elliot J Carr, Matthew J Simpson

Diffusion of molecules within biological cells and tissues is strongly influenced by crowding. A key quantity to characterize diffusion is the particle lifetime, which is the time…