activity
20142022
most citedUsing persistent homology and dynamical distances to analyze protein binding

93 citations · 106 across the 8 of their papers we have counts for

collaborators

8 papers

stat.ME2022★ 2 cited

Topological Hidden Markov Models

Adam B Kashlak, Prachi Loliencar, Giseon Heo

The hidden Markov model (HMM) is a classic modeling tool with a wide swath of applications. Its inception considered observations restricted to a finite alphabet, but it was quickl…

stat.ML2021

Phenotyping OSA: a time series analysis using fuzzy clustering and persistent homology

Prachi Loliencar, Giseon Heo

Sleep apnea is a disorder that has serious consequences for the pediatric population. There has been recent concern that traditional diagnosis of the disorder using the apnea-hypop…

q-bio.QM2020★ 3 cited

Classifying sleep states using persistent homology and Markov chain: a Pilot Study

Sarah Tymochko, Kritika Singhal, Giseon Heo

Obstructive sleep Apnea (OSA) is a form of sleep disordered breathing characterized by frequent episodes of upper airway collapse during sleep. Pediatric OSA occurs in 1-5% of chil…

q-bio.QM2020

A survey of statistical learning techniques as applied to inexpensive pediatric Obstructive Sleep Apnea data

Emily T. Winn, Marilyn Vazquez, Prachi Loliencar +3

Pediatric obstructive sleep apnea affects an estimated 1-5% of elementary-school aged children and can lead to other detrimental health problems. Swift diagnosis and treatment are…

cs.CV2019

Diagnosis of Pediatric Obstructive Sleep Apnea via Face Classification with Persistent Homology and Convolutional Neural Networks

Milad Kiaee, Adam B Kashlak, Jisu Kim +1

Obstructive sleep apnea is a serious condition causing a litany of health problems especially in the pediatric population. However, this chronic condition can be treated if diagnos…

q-bio.QM2017★ 1 cited

Topological Data Analysis of Clostridioides difficile Infection and Fecal Microbiota Transplantation

Pavel Petrov, Stephen T Rush, Zhichun Zhai +3

Computational topologists recently developed a method, called persistent homology to analyze data presented in terms of similarity or dissimilarity. Indeed, persistent homology stu…

stat.ME2015★ 7 cited

Estimation for bivariate quantile varying coefficient model

Linglong Kong, Haoxu Shu, Giseon Heo +1

We propose a bivariate quantile regression method for the bivariate varying coefficient model through a directional approach. The varying coefficients are approximated by the B-spl…

stat.ME2014★ 93 cited

Using persistent homology and dynamical distances to analyze protein binding

Violeta Kovacev-Nikolic, Peter Bubenik, Dragan Nikolić +1

Persistent homology captures the evolution of topological features of a model as a parameter changes. The most commonly used summary statistics of persistent homology are the barco…