60 citations · 95 across the 5 of their papers we have counts for
5 papers
Automated Standardization of Legacy Biomedical Metadata Using an Ontology-Constrained LLM Agent
Josef Hardi, Martin J. O'Connor, Marcos Martinez-Romero +3
Descriptive scientific metadata in public repositories are often incomplete and inconsistent with community standards and ontologies, limiting data FAIRness. Large language models…
A Comprehensive Approach to Ensuring Quality in Spreadsheet-Based Metadata
Martin J. O'Connor, Marcos Martínez-Romero, Mete Ugur Akdogan +2
While scientists increasingly recognize the importance of metadata in describing their data, spreadsheets remain the preferred tool for supplying this information despite their lim…
The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments
Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez-Romero +4
The Center for Expanded Data Annotation and Retrieval (CEDAR) aims to revolutionize the way that metadata describing scientific experiments are authored. The software we have devel…
Using association rule mining and ontologies to generate metadata recommendations from multiple biomedical databases
Marcos Martínez-Romero, Martin J. O'Connor, Attila L. Egyedi +4
Metadata-the machine-readable descriptions of the data-are increasingly seen as crucial for describing the vast array of biomedical datasets that are currently being deposited in p…
Metadata in the BioSample Online Repository are Impaired by Numerous Anomalies
Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez-Romero +2
The metadata about scientific experiments are crucial for finding, reproducing, and reusing the data that the metadata describe. We present a study of the quality of the metadata s…