activity
20172019
most citedThe CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments

60 citations · 100 across the 3 of their papers we have counts for

collaborators

6 papers

cs.CL2019

Use of OWL and Semantic Web Technologies at Pinterest

Rafael S. Gonçalves, Matthew Horridge, Rui Li +6

Pinterest is a popular Web application that has over 250 million active users. It is a visual discovery engine for finding ideas for recipes, fashion, weddings, home decoration, an…

cs.DB201960 cited

The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments

Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez-Romero +4

The Center for Expanded Data Annotation and Retrieval (CEDAR) aims to revolutionize the way that metadata describing scientific experiments are authored. The software we have devel…

cs.IR201931 cited

WebProtégé: A Cloud-Based Ontology Editor

Matthew Horridge, Rafael S. Gonçalves, Csongor I. Nyulas +2

We present WebProtégé, a tool to develop ontologies represented in the Web Ontology Language (OWL). WebProtégé is a cloud-based application that allows users to collaboratively edi…

cs.CL2019

Aligning Biomedical Metadata with Ontologies Using Clustering and Embeddings

Rafael S. Gonçalves, Maulik R. Kamdar, Mark A. Musen

The metadata about scientific experiments published in online repositories have been shown to suffer from a high degree of representational heterogeneity---there are often many way…

cs.DB2018

The variable quality of metadata about biological samples used in biomedical experiments

Rafael S. Gonçalves, Mark A. Musen

We present an analytical study of the quality of metadata about samples used in biomedical experiments. The metadata under analysis are stored in two well-known databases: BioSampl…

cs.DB20179 cited

Metadata in the BioSample Online Repository are Impaired by Numerous Anomalies

Rafael S. Gonçalves, Martin J. O'Connor, Marcos Martínez-Romero +2

The metadata about scientific experiments are crucial for finding, reproducing, and reusing the data that the metadata describe. We present a study of the quality of the metadata s…