155 citations · 1k across the 40 of their papers we have counts for
3 papers · 2 filters
GRIM-Filter: Fast Seed Location Filtering in DNA Read Mapping Using Processing-in-Memory Technologies
Jeremie S. Kim, Damla Senol Cali, Hongyi Xin +7
Motivation: Seed location filtering is critical in DNA read mapping, a process where billions of DNA fragments (reads) sampled from a donor are mapped onto a reference genome to id…
GRIM-filter: fast seed filtering in read mapping using emerging memory technologies
Jeremie S Kim, Damla Senol, Hongyi Xin +7
Motivation: Seed filtering is critical in DNA read mapping, a process where billions of DNA fragments (reads) sampled from a donor are mapped onto a reference genome to identify ge…
MAGNET: Understanding and Improving the Accuracy of Genome Pre-Alignment Filtering
Mohammed Alser, Onur Mutlu, Can Alkan
In the era of high throughput DNA sequencing (HTS) technologies, calculating the edit distance (i.e., the minimum number of substitutions, insertions, and deletions between a pair…