activity
20142021
most citedUnderwater dual-magnification imaging for automated lake plankton monitoring

49 citations · 94 across the 8 of their papers we have counts for

collaborators

8 papers

q-bio.NC2021★ 2 cited

Experimentally testable whole brain manifolds that recapitulate behavior

Gerald M Pao, Cameron Smith, Joseph Park +8

We propose an algorithm grounded in dynamical systems theory that generalizes manifold learning from a global state representation, to a network of local interacting manifolds term…

q-bio.PE2021★ 49 cited

Underwater dual-magnification imaging for automated lake plankton monitoring

E. Merz, T. Kozakiewicz, M. Reyes +10

We present an approach for automated in-situ monitoring of phytoplankton and zooplankton communities based on a dual magnification dark-field imaging microscope/camera. We describe…

q-bio.PE2020★ 7 cited

Second-order Phase Transition in Phytoplankton Trait Dynamics

Jenny Held, Tom Lorimer, Francesco Pomati +2

Key traits of unicellular species, like cell size, often follow scale-free or self-similar distributions, hinting at the possibility of an underlying critical process. However, lin…

stat.ML2018★ 3 cited

Natural data structure extracted from neighborhood-similarity graphs

Tom Lorimer, Karlis Kanders, Ruedi Stoop

'Big' high-dimensional data are commonly analyzed in low-dimensions, after performing a dimensionality-reduction step that inherently distorts the data structure. For the same purp…

q-bio.NC2017★ 1 cited

Robust transformations of firing patterns for neural networks

Karlis Kanders, Tom Lorimer, Yoko Uwate +2

As a promising computational paradigm, occurrence of critical states in artificial and biological neural networks has attracted wide-spread attention. An often-made explicit or imp…

q-bio.NC2015★ 1 cited

Hopf-type neurons increase input-sensitivity by forming forcing-coupled ensembles

Florian Gomez, Tom Lorimer, Ruedi Stoop

Astounding properties of biological sensors can often be mapped onto a dynamical system in the vicinity a bifurcation. For mammalian hearing, a Hopf bifurcation description has bee…

physics.soc-ph2015★ 20 cited

Two universal physical principles shape the power-law statistics of real-world networks

Tom Lorimer, Florian Gomez, Ruedi Stoop

The study of complex networks has pursued an understanding of macroscopic behavior by focusing on power-laws in microscopic observables. Here, we uncover two universal fundamental…

nlin.AO2014★ 11 cited

Mammalian cochlea as a physics guided evolution-optimized hearing sensor

Tom Lorimer, Florian Gomez, Ruedi Stoop

Nonlinear physics plays an essential role in hearing, from sound signal generation to sound sensing to the processing of complex sound environments. We demonstrate that the evoluti…