16 citations · 16 across the 7 of their papers we have counts for
7 papers
Entropy Transfer and Dynamics of Allostery in Proteins
Aysima Hacisuleyman, Burak Erman
Allostery is an intrinsic spatiotemporal property of all proteins, resulting from long range correlations in the order of several nanometers and time scales of nanoseconds. Informa…
Three Universal Distribution Functions for Native Proteins with Harmonic Interactions
Burak Erman
We used statistical thermodynamics of conformational fluctuations and the elements of algebraic graph theory together with data from 2000 protein crystal structures, and showed tha…
Effects of ligand binding upon flexibility of proteins
Burak Erman
Binding of a ligand on a protein changes the flexibility of certain parts of the protein, which directly affects its function. These changes are not the same at each point, some pa…
Fractal Structure of Shortest Interaction Paths in Native Proteins and Determination of Residues on a Given Shortest Path
Burak Erman
Fractal structure of shortest paths depends strongly on interresidue interaction cutoff distance. The dimensionality of shortest paths is calculated as a function of interaction cu…
Mode-coupling points to functionally important residues in Myosin II
Onur Varol, Deniz Yuret, Burak Erman +1
Relevance of mode coupling to energy/information transfer during protein function, particularly in the context of allosteric interactions is widely accepted. However, existing evid…
The effect of point mutations on energy conduction pathways in proteins
Nazan B. Walpoth, Burak Erman
Energetically responsive residues of the 173 amino acid N-terminal domain of the cardiac Ryanodine receptor RyR2 are identified by a simple elastic net model. Residues that respond…
Relationships between ligand binding sites, protein architecture and correlated paths of energy and conformational fluctuations
Burak Erman
Statistical thermodynamics basis of energy and residue position fluctuations is explained for native proteins. The protein and its surroundings are treated as a canonical system wi…