2 papers
q-bio.GN2025
An algorithm to align a chain of sequences to paths in a pangenome graph
Gorkem Kadir Solun, Ugur Dogrusoz
Affordable, high-quality whole-genome assemblies have made it possible to construct rich pangenomes that capture haplotype diversity across many species. As these datasets grow, th…
cs.HC2017
Chisio: A Compound Graph Editing and Layout Framework
Cihan Kucukkececi, Ugur Dogrusoz, Esat Belviranli +1
We introduce a new free, open-source compound graph editing and layout framework named Chisio, based on the Eclipse Graph Editing Framework (GEF) and written in Java. Chisio can be…