15 citations · 39 across the 7 of their papers we have counts for
8 papers
Optical turbulence retrieval of heterogeneous media
Masaki Watabe, Joe Sakamoto, Hideaki Yoshimura +2
The transport of intensity equation (TIE) has revolutionized phase retrieval in optical microscopy, yet its application to complex media with absorption/scattering remains challeng…
Automating Care by Self-maintainability for Full Laboratory Automation
Koji Ochiai, Yuya Tahara-Arai, Akari Kato +6
The automation of experiments in life sciences and chemistry has significantly advanced with the development of various instruments and AI technologies. However, achieving full lab…
Signaling activations through G-protein-coupled-receptor aggregations
Masaki Watabe, Hideaki Yoshimura, Satya N. V. Arjunan +2
Eukaryotic cells transmit extracellular signal information to cellular interiors through the formation of a ternary complex made up of a ligand (or agonist), G-protein, and G-prote…
Cooperativity transitions driven by higher-order oligomer formations in ligand-induced receptor dimerization
Masaki Watabe, Satya N. V. Arjunan, Wei Xiang Chew +2
While cooperativity in ligand-induced receptor dimerization has been linked with receptor-receptor couplings via minimal representations of physical observables, effects arising fr…
Surface reaction-diffusion kinetics on lattice at the microscopic scale
Wei-Xiang Chew, Kazunari Kaizu, Masaki Watabe +3
Microscopic models of reaction-diffusion processes on the cell membrane can link local spatiotemporal effects to macroscopic self-organized patterns often observed on the membrane.…
Reaction-diffusion kinetics on lattice at the microscopic scale
Wei-Xiang Chew, Kazunari Kaizu, Masaki Watabe +3
Lattice-based stochastic simulators are commonly used to study biological reaction-diffusion processes. Some of these schemes that are based on the reaction-diffusion master equati…
Simulation of live-cell imaging system reveals hidden uncertainties in cooperative binding measurements
Masaki Watabe, Satya N. V. Arjunan, Wei Xiang Chew +2
We propose a computational method to quantitatively evaluate the systematic uncertainties that arise from undetectable sources in biological measurements using live-cell imaging te…
eGFRD in all dimensions
Thomas R. Sokolowski, Joris Paijmans, Laurens Bossen +7
Biochemical reactions typically occur at low copy numbers, but at once in crowded and diverse environments. Space and stochasticity therefore play an essential role in biochemical…