46 citations · 56 across the 6 of their papers we have counts for
6 papers
Active Causal Learning for Decoding Chemical Complexities with Targeted Interventions
Zachary R. Fox, Ayana Ghosh
Predicting and enhancing inherent properties based on molecular structures is paramount to design tasks in medicine, materials science, and environmental management. Most of the cu…
Blackout Diffusion: Generative Diffusion Models in Discrete-State Spaces
Javier E Santos, Zachary R. Fox, Nicholas Lubbers +1
Typical generative diffusion models rely on a Gaussian diffusion process for training the backward transformations, which can then be used to generate samples from Gaussian noise.…
Extracting Information from Stochastic Trajectories of Gene Expression
Zachary R Fox
Gene expression is a stochastic process in which cells produce biomolecules essential to the function of life. Modern experimental methods allow for the measurement of biomolecules…
Aging power spectrum of membrane protein transport and other subordinated random walks
Zachary R Fox, Eli Barkai, Diego Krapf
Single-particle tracking offers detailed information about the motion of molecules in complex environments such as those encountered in live cells, but the interpretation of experi…
Stochasticity or Noise in Biochemical Reactions
Zachary Fox, Brian Munsky
Heterogeneity in gene expression across isogenic cell populations can give rise to phenotypic diversity, even when cells are in homogenous environments. This diversity arises from…
Nonspecific transcription factor binding reduces variability in transcription factor and target protein expression
Mohammad Soltani, Pavol Bokes, Zachary Fox +1
Transcription factors (TFs) interact with a multitude of binding sites on DNA and partner proteins inside cells. We investigate how nonspecific binding/unbinding to such decoy bind…