#bioinformatics try — diffusion models for protein design efficient attention beyond transformers papers like retrieval-augmented generation
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5 papers match
cs.AI 2026 ☆
Evaluating Agentic Bioinformatics through Function, Evidence, and Validation Phuc Pham, Truong-Son Hy
The paper proposes a Function–Evidence–Validation (FEV) framework to evaluate bioinformatics workflows generated by large language model agents, emphasizing workflow correctness an…
#bioinformatics #large language models #agentic systems #workflow evaluation
cs.AI 2026 ☆
PerturbMap: Cross-Context Transfer of Single-Cell Perturbation Responses Panpan Cui, Yiqi Liu, Wenhao Sun
PerturbMap predicts missing single‑cell perturbation effects in a new cellular context by combining a low‑rank local model with ridge‑based transfer of measured responses from sour…
#single-cell perturbation #transfer learning #cross-context prediction #low-rank modeling
q-bio.QM 2026 ☆
TheBioCollection: Unified Pre-Training Scale LLM Corpus for Biology Hyunjin Seo, Hyeon Hwang, Gyubok Lee +7
The paper introduces TheBioCollection, a 52.6‑billion‑token unified corpus that aggregates diverse biological resources for pre‑training large language models, and shows that train…
#large language models #biological corpora #pretraining data #bioinformatics
q-bio.GN 2026 ☆
Causal Discovery of Radiation Response Mechanisms in Human Cells Ashka Shah, Rick Stevens
The paper applies causal discovery methods to RNA‑sequencing data to infer directed gene regulatory networks that explain how human cells respond to different radiation dose rates.
#causal discovery #radiation response #gene expression #network inference
q-bio.PE 2026 ☆
Contrasting statistical patterns in melodic and molecular evolution reveal distinctive constraints in a culturally evolving system John M McBride, W Tecumseh Fitch
The paper introduces a rhythm-aware sequence alignment method to analyze thousands of Irish folk melodies, revealing evolutionary patterns that differ from those in protein sequenc…
#melodic evolution #cultural transmission #bioinformatics #sequence alignment
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