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physics.bio-phJul 1, 2002
27
citations (OpenAlex)
authors
  • M. Pillsbury
  • H. Orland
  • A. Zee
institutions
  • Commissariat à l'Énergie Atomique et aux Énergies Alternatives
  • Kavli Institute for Theoretical Physics
  • University of California, Santa Barbara
arXiv abstractPDF
paper

A steepest descent calculation of RNA pseudoknots

arXiv:physics/0207110 · doi:10.1103/PhysRevE.72.011911

Abstract

We enumerate possible topologies of pseudoknots in single-stranded RNA molecules. We use a steepest-descent approximation in the large N matrix field theory, and a Feynman diagram formalism to describe the resulting pseudoknot structure.

References in corpus (1)

  • RNA Folding and Large N Matrix Theory

Cited by in corpus (9)

  • Topological recursion for chord diagrams, RNA complexes, and cells in moduli spaces
  • The Topology of Pseudoknotted Homopolymers
  • Improved RNA pseudoknots prediction and classification using a new topological invariant
  • Enumeration of chord diagrams on many intervals and their non-orientable analogs
  • Thermodynamics of a model for RNA folding
  • Cold denaturation of RNA secondary structures with loop entropy and quenched disorder
  • Genus Comparisons in the Topological Analysis of RNA Structures
  • Topological phase transition in a RNA model in the de Gennes regime
  • Topological classification of RNA structures
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