Model Channel Ion Currents in NaCl - SPC/E Solution with Applied-Field Molecular Dynamics

Abstract

Using periodic boundary conditions and a constant applied field, we have simulated current flow through an 8.125 Angstrom internal diameter, rigid, atomistic channel with polar walls in a rigid membrane using explicit ions and SPC/E water. Channel and bath currents were computed from ten 10-ns trajectories for each of 10 different conditions of concentration and applied voltage. An electric field was applied uniformly throughout the system to all mobile atoms. On average, the resultant net electric field falls primarily across the membrane channel, as expected for two conductive baths separated by a membrane capacitance. The channel is rarely occupied by more than one ion. Current-voltage relations are concentration-dependent and superlinear at high concentrations.

Accepted for publication in Biophysical Journal

References in corpus (2)

• How to mesh up Ewald sums (I): A theoretical and numerical comparison of various particle mesh routines
• How to mesh up Ewald sums (II): An accurate error estimate for the P3M algorithm

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