Molecular geometry optimization with a genetic algorithm
arXiv:mtrl-th/9506004 · doi:10.1103/PhysRevLett.75.288
Abstract
We present a method for reliably determining the lowest energy structure of an atomic cluster in an arbitrary model potential. The method is based on a genetic algorithm, which operates on a population of candidate structures to produce new candidates with lower energies. Our method dramatically outperforms simulated annealing, which we demonstrate by applying the genetic algorithm to a tight-binding model potential for carbon. With this potential, the algorithm efficiently finds fullerene cluster structures up to starting from random atomic coordinates.
4 pages REVTeX 3.0 plus 3 postscript figures; to appear in Physical Review Letters. Additional information available under "genetic algorithms" at http://www.public.iastate.edu/~deaven/
Cited by in corpus (84)
- CALYPSO: a method for crystal structure prediction
- Ab initio Random Structure Searching
- Roulette-wheel selection via stochastic acceptance
- Density functional study of Au (n=2-20) clusters: lowest-energy structures and electronic properties
- Predicting Two-Dimensional Boron-Carbon Compounds by the Global Optimization Method
- Deep Potentials for Materials Science
- Adaptive Genetic Algorithm for Crystal Structure Prediction
- Thermodynamics and the Global Optimization of Lennard-Jones clusters
- Towards Direct-Gap Silicon Phases by the Inverse Band Structure Design Approach
- A Periodic Genetic Algorithm with Real-Space Representation for Crystal Structure and Polymorph Prediction
- Constructing first-principles phase diagrams of amorphous LixSi using machine-learning-assisted sampling with an evolutionary algorithm
- Structure and stability of copper clusters : A tight-binding molecular dynamics study
- Structure determination of disordered materials from diffraction data
- The performance of Minima Hopping and Evolutionary Algorithms for cluster structure prediction
- First-principles molecular structure search with a genetic algorithm
- Prediction of grain boundary structure and energy by machine learning
- Assessing the efficiency of first-principles basin-hopping sampling
- New ultrahigh pressure phases of H2O ice predicted using an adaptive genetic algorithm
- Steps on Rutile TiO2(110): Active Sites for Water and Methanol Dissociation
- Four superhard carbon allotropes: First-principle study
- Prospects of Quantum Computing for Molecular Sciences
- Efficient moves for global geometry optimization methods and their application to binary systems
- Finding the reconstructions of semiconductor surfaces via a genetic algorithm
- Materials informatics based on evolutionary algorithms: Application to search for superconducting hydrogen compounds
- Unveiling the Origin of the Insulating Ferromagnetism in LaMnO3 Thin Film
- Large magnetic anisotropy predicted for rare-earth free Fe16-xCoxN2 alloys
- Crystalline 'Genes' in Metallic Liquids
- MAISE: Construction of neural network interatomic models and evolutionary structure optimization
- Predicting Patchy Particle Crystals: Variable Box Shape Simulations and Evolutionary Algorithms
- Machine learning enhanced global optimization by clustering local environments to enable bundled atomic energies
- Continuous extremal optimization for Lennard-Jones Clusters
- Efficient ab initio schemes for finding thermodynamically stable and metastable atomic structures: Benchmark of cascade genetic algorithms
- Structure of Si(114) determined by global optimization methods
- Exploration of tetrahedral structures in silicate cathodes using a motif-network scheme
- Atomistic Structure Learning Algorithm with surrogate energy model relaxation
- MUSE: Multi-algorithm collaborative crystal structure prediction
- The effect of compression on the global optimization of atomic clusters
- Computational Investigation of Copper Phosphides as Conversion Anodes for Lithium-Ion Batteries
- Computational Design of Nanoclusters by Property-Based Genetic Algorithms: Tuning the Electronic Properties of (TiO) Clusters
- Materials under high pressure: A chemical perspective
- Unraveling the Planar-Globular Transition in Gold Nanoclusters through Evolutionary Search
- Systematic investigation of the structure of the Si(553)-Au surface from first principles
- Hyperspatial optimisation of structures
- Singlet state creation and Universal quantum computation in NMR using Genetic Algorithm
- Atomistic structure search using local surrogate mode
- Quantum control via a genetic algorithm of the field ionization pathway of a Rydberg electron
- Annealing a Magnetic Cactus into Phyllotaxis
- Evolutionary approach for finding the atomic structure of steps on stable crystal surfaces
- Robustness of "cut and splice" genetic algorithms in the structural optimization of atomic clusters
- Predicting the Structure of Alloys using Genetic Algorithms
- NP-hardness of the cluster minimization problem revisited
- SGO: An ultrafast engine for ab initio atomic structure global optimization by differential evolution
- Phase Diagram and Structure Map of Binary Nanoparticle Superlattices from a Lennard-Jones Model
- Global Structure Search for Molecules on Surfaces: Efficient Sampling with Curvilinear Coordinates
- Qualities, challenges and future of genetic algorithms: a literature review
- Generating candidates in global optimization algorithms using complementary energy landscapes
- Calculating the free energy of 2D materials on substrates
- Searching for the optimum conditions for silicene growth by calculations of the free energy
- MagGene: A genetic evolution program for magnetic structure prediction
- Inverse simulated annealing for the determination of amorphous structures
- Structures, phase transitions, and magnetic properties of Co3Si from first-principles calculations
- Optimal atomic-resolution structures of prion AGAAAAGA amyloid fibrils
- Prediction of surface reconstructions using MAGUS
- Optimization of semiconductor quantum devices by evolutionary search
- Electronic and magnetic properties of multishell Co nanowires coated with Cu
- The phase stability of large-size nanoparticle alloy catalysts at ab initio quality using a nearsighted force-training approach
- StructOpt: A modular materials structure optimization suite incorporating experimental data and simulated energies
- Phase Stability of the Argon Crystal: A First-Principles Study Based on Random Phase Approximation plus Renormalized Single Excitation Corrections
- Reliable computational prediction of supramolecular ordering of complex molecules under electrochemical conditions
- Crystal phases of soft spheres systems in a slab geometry
- Monoclinic YFe phases predicted from first principles
- Unconventional iron-magnesium compounds at terapascal pressures
- Prediction of crystal structures and motifs in the Fe-Mg-O system at Earth's core pressures
- Testing of quantum nonlocal correlations under constrained free will and imperfect detectors
- Predicting Magnetic Janus Particle Assembly with Differential Evolution Algorithm
- Evolutionary crystal structure prediction and novel high-pressure phases
- Phase transition and enhanced hardness of LaB4 under pressure
- Machine-Learned Bond-Order Potential for Exploring the Configuration Space of Carbon
- Calculation of Optical Response Functions of Dilute-N GaPAsN Lattice-matched to Si
- Graph-Convolutional Deep Learning to Identify Optimized Molecular Configurations
- Atomistic Global Optimization X: A Python package for optimization of atomistic structures
- Sequence Engineering of Copolymers using Evolutionary Computing
- Iron-rich Fe-O compounds with closest-packed layers at core pressures
- Genetic optimization algorithms applied toward mission computability models