Expressions for forces and torques in molecular simulations using rigid bodies
arXiv:cond-mat/0608387 · doi:10.1080/00268970601075238
Abstract
Expressions for intermolecular forces and torques, derived from pair potentials between rigid non-spherical units, are presented. The aim is to give compact and clear expressions, which are easily generalised, and which minimise the risk of error in writing molecular dynamics simulation programs. It is anticipated that these expressions will be useful in the simulation of liquid crystalline systems, and in coarse-grained modelling of macromolecules.
References in corpus (5)
- Adaptive Resolution Molecular Dynamics Simulation: Changing the Degrees of Freedom on the Fly
- Interaction potentials for soft and hard ellipsoids
- The directional contact distance of two ellipsoids: Coarse-grained potentials for anisotropic interactions
- Influence of solvent quality on effective pair potentials between polymers in solution
- Coarse-grained Interaction Potentials for Anisotropic Molecules
Cited by in corpus (11)
- Diffusion and spatial correlations in suspensions of swimming particles
- Dynamics of confined suspensions of swimming particles
- Coarse-Grained Simulation of DNA using LAMMPS
- Self-assembly of short DNA duplexes: from a coarse-grained model to experiments through a theoretical link
- Coarse graining of biochemical systems described by discrete stochastic dynamics
- Hyperuniformity and conservation laws in non-equilibrium systems
- Collective Motion of Quincke Rollers with Fully Resolved Hydrodynamics
- Simple, self-assembling, single-site model amphiphile for water-free simulation of lyotropic phases
- Time correlation functions in the Lebwohl-Lasher model of liquid crystals
- SiMPLISTIC: A Novel Pairwise Potential for Implicit Solvent Lipid Simulations with Single-site Models
- Signatures of physical constraints in rotating rigid bodies