Statistical Mechanics of DNA-Mediated Colloidal Aggregation
arXiv:cond-mat/0606399 · doi:10.1103/PhysRevE.74.041408
Abstract
We present a statistical mechanical model of aggregation in colloidal systems with DNA mediated interactions. We obtain a general result for the two-particle binding energy in terms of the hybridization free energy of DNA and two model dependent properties: the average number of available DNA bridges and the effective DNA conccentration . We calculate these parameters for a particular DNA bridging scheme. The fraction of all the -mers, including the infinite aggregate, are shown to be universal functions of a single parameter directly related to the two-particle binding energy. We explicitly take into account the partial ergodicity of the problem resulting from the slow DNA binding-unbinding dynamics, and introduce the concept of angular localization of DNA linkers. In this way, we obtain a direct link between DNA thermodynamics and the global aggregation and melting properties in DNA-colloidal systems. The results of the theory are shown to be in quantitative agreement with two recent experiments with particles of micron and nanometer size. PACS numbers: 81.16.Dn, 82.20.Db, 68.65.-k, 87.14.Gg
12 pages, 6 figures, v2: added reference, expanded conclusion, added journal ref