The Study of Correlation Structures of DNA Sequences: A Critical Review
arXiv:adap-org/9704003 · doi:10.1016/S0097-8485(97)00022-3
Abstract
The study of correlation structure in the primary sequences of DNA is reviewed. The issues reviewed include: symmetries among 16 base-base correlation functions, accurate estimation of correlation measures, the relationship between and Lorentzian spectra, heterogeneity in DNA sequences, different modeling strategies of the correlation structure of DNA sequences, the difference of correlation structure between coding and non-coding regions (besides the period-3 pattern), and source of broad distribution of domain sizes. Although some of the results remain controversial, a body of work on this topic constitutes a good starting point for future studies.
LaTeX, two figures, postscript is expected to be 46 pages. To appear in the special issue of Computer & Chemistry (1997)
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