Ultrametric Violation Distance: Polynomial Kernel and FPT Algorithm

Abstract

In the Ultrametric Violation Distance problem, we are given a set of distances between $n$ points, and the goal is to modify the minimum number of distances so that the resulting set forms a valid ultrametric. In other words, the task is to fit an ultrametric to the given data, where the quality of the fit is measured by the ${\ell }_0$-norm of the error. While variants of this problem under the ${\ell }_{\infty }$ and ${\ell }_1$-norms have been well studied, the complexity of Ultrametric Violation Distance under the ${\ell }_0$-norm remained largely unexplored until recently. This changed with the work of Cohen-Addad, Fan, Lee, and Mesmay [FOCS 2022], who introduced a constant-factor approximation algorithm. Significant further progress on approximation algorithms was made in subsequent work by Charikar and Gao [SODA 2024], and by An, Kao, Lee, and Lee [FOCS 2025]. In this paper, we initiate a systematic study of Ultrametric Violation Distance from the perspectives of kernelization and fixed-parameter tractability (FPT). By the work of Fan, Gilbert, Raichel, Sonthalia, and Van Buskirk [SWAT 2020], the problem is known to be FPT when parameterized by the number of violated distances $k$. We show that the problem admits a kernel with $\mathcal{O}(k^2)$ points. Additionally, we present a single-exponential-time algorithm with running time $9^k\cdot n^{\mathcal{O}(1)}$, which is asymptotically tight.