Stochastic pH oscillations in a model of the urea-urease reaction confined to lipid vesicles

Abstract

The urea-urease clock reaction is a pH switch from acid to basic that can turn into a pH oscillator if it occurs inside a suitable open reactor. We study the confinement of the reaction to lipid vesicles, which permit the exchange with an external reservoir by differential transport, enabling the recovery of the pH level and yielding a constant supply of urea molecules.For microscopically small vesicles, the discreteness of the number of molecules requires a stochastic treatment of the reaction dynamics. Our analysis shows that intrinsic noise induces a significant statistical variation of the oscillation period, which increases as the vesicles become smaller. The mean period, however, is found to be remarkably robust for vesicle sizes down to approximately 200 nm. The observed oscillations are explained as a canard-like limit cycle that differs from the wide class of conventional feedback oscillators.

11 pages, 4 figures with 2 pages of Supporting info; published in the Journal of Physical Chemistry Letters

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• Anomalous transport in the crowded world of biological cells
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Cited by in corpus (1)

• Accurate reduced models for the pH oscillations in the urea-urease reaction confined to giant lipid vesicles