Bayesian inference of Lévy walks via hidden Markov models
arXiv:2107.05390
Abstract
The Lévy walk is a non-Brownian random walk model that has been found to describe anomalous dynamic phenomena in diverse fields ranging from biology over quantum physics to ecology. Recurrently occurring problems are to examine whether observed data are successfully quantified by a model classified as Lévy walks or not and extract the best model parameters in accordance with the data. Motivated by such needs, we propose a hidden Markov model for Lévy walks and computationally realize and test the corresponding Bayesian inference method. We introduce a Markovian decomposition scheme to approximate a renewal process governed by a power-law waiting time distribution. Using this, we construct the likelihood function of Lévy walks based on a hidden Markov model and the forward algorithm. With the Lévy walk trajectories simulated at various conditions, we perform the Bayesian inference for parameter estimation and model classification. We show that the power-law exponent of the flight-time distribution can be successfully extracted even at the condition that the mean-squared displacement does not display the expected scaling exponent due to the noise or insufficient trajectory length. It is also demonstrated that the Bayesian method performs remarkably inferring the Lévy walk trajectories from given unclassified trajectory data set if the noise level is moderate.
References in corpus (16)
- In vivo anomalous diffusion and weak ergodicity breaking of lipid granules
- Single particle tracking in systems showing anomalous diffusion: the role of weak ergodicity breaking
- Economic Fluctuations and Diffusion
- Running and tumbling with E. coli in polymeric solutions
- Viscoelastic subdiffusion: from anomalous to normal
- Nonergodic Subdiffusion from Brownian Motion in an Inhomogeneous Medium
- Machine learning method for single trajectory characterization
- Bacteria display optimal transport near surfaces -- bacteria as intermittent active chiral particles: trapped by hydrodynamics, escaping by adhesion
- Record statistics for biased random walks, with an application to financial data
- Quantifying the non-ergodicity of scaled Brownian motion
- Differentiating the Lévy walk from a composite correlated random walk
- Ergodicity breaking and particle spreading in noisy heterogeneous diffusion processes
- Memory effects and Lévy walk dynamics in intracellular transport of cargoes
- Superdiffusive dispersals impart the geometry of underlying random walks
- AnDi: The Anomalous Diffusion Challenge
- Bayesian inference with information content model check for Langevin equations