Medical Image Segmentation Using Deep Learning: A Survey
arXiv:2009.13120 · doi:10.1049/ipr2.12419
Abstract
Deep learning has been widely used for medical image segmentation and a large number of papers has been presented recording the success of deep learning in the field. In this paper, we present a comprehensive thematic survey on medical image segmentation using deep learning techniques. This paper makes two original contributions. Firstly, compared to traditional surveys that directly divide literatures of deep learning on medical image segmentation into many groups and introduce literatures in detail for each group, we classify currently popular literatures according to a multi-level structure from coarse to fine. Secondly, this paper focuses on supervised and weakly supervised learning approaches, without including unsupervised approaches since they have been introduced in many old surveys and they are not popular currently. For supervised learning approaches, we analyze literatures in three aspects: the selection of backbone networks, the design of network blocks, and the improvement of loss functions. For weakly supervised learning approaches, we investigate literature according to data augmentation, transfer learning, and interactive segmentation, separately. Compared to existing surveys, this survey classifies the literatures very differently from before and is more convenient for readers to understand the relevant rationale and will guide them to think of appropriate improvements in medical image segmentation based on deep learning approaches.
References in corpus (56)
- An Image is Worth 16x16 Words: Transformers for Image Recognition at Scale
- A Survey on Deep Learning in Medical Image Analysis
- Distilling the Knowledge in a Neural Network
- YOLOv4: Optimal Speed and Accuracy of Object Detection
- MobileNets: Efficient Convolutional Neural Networks for Mobile Vision Applications
- Automated Design of Deep Learning Methods for Biomedical Image Segmentation
- Conditional Generative Adversarial Nets
- Rethinking Atrous Convolution for Semantic Image Segmentation
- Attention U-Net: Learning Where to Look for the Pancreas
- TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation
- Fully Convolutional Networks for Semantic Segmentation
- Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations
- Striving for Simplicity: The All Convolutional Net
- MultiResUNet : Rethinking the U-Net Architecture for Multimodal Biomedical Image Segmentation
- CE-Net: Context Encoder Network for 2D Medical Image Segmentation
- Squeeze-and-Excitation Networks
- Neural Architecture Search: A Survey
- AutoML: A Survey of the State-of-the-Art
- The Liver Tumor Segmentation Benchmark (LiTS)
- Deeply-Supervised Nets
- Swin-Unet: Unet-like Pure Transformer for Medical Image Segmentation
- Deep learning for cardiac image segmentation: A review
- Interactive Medical Image Segmentation using Deep Learning with Image-specific Fine-tuning
- Joint Optic Disc and Cup Segmentation Based on Multi-label Deep Network and Polar Transformation
- CHAOS Challenge -- Combined (CT-MR) Healthy Abdominal Organ Segmentation
- Anatomically Constrained Neural Networks (ACNN): Application to Cardiac Image Enhancement and Segmentation
- A large annotated medical image dataset for the development and evaluation of segmentation algorithms
- A review: Deep learning for medical image segmentation using multi-modality fusion
- Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional Neural Networks and 3D Conditional Random Fields
- Fully Dense UNet for 2D Sparse Photoacoustic Tomography Artifact Removal
- Boundary loss for highly unbalanced segmentation
- DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation
- Semantic Segmentation using Adversarial Networks
- Modified U-Net (mU-Net) with Incorporation of Object-Dependent High Level Features for Improved Liver and Liver-Tumor Segmentation in CT Images
- Optimization for Medical Image Segmentation: Theory and Practice when evaluating with Dice Score or Jaccard Index
- Markov Random Field Segmentation of Brain MR Images
- Searching for Efficient Multi-Scale Architectures for Dense Image Prediction
- Deep Learning for Multi-Task Medical Image Segmentation in Multiple Modalities
- The KiTS19 Challenge Data: 300 Kidney Tumor Cases with Clinical Context, CT Semantic Segmentations, and Surgical Outcomes
- Machine Learning Techniques for Biomedical Image Segmentation: An Overview of Technical Aspects and Introduction to State-of-Art Applications
- Deep Vessel Segmentation By Learning Graphical Connectivity
- Diagnose like a Radiologist: Attention Guided Convolutional Neural Network for Thorax Disease Classification
- Superhuman Accuracy on the SNEMI3D Connectomics Challenge
- 3D Segmentation with Exponential Logarithmic Loss for Highly Unbalanced Object Sizes
- Uncertainty and Interpretability in Convolutional Neural Networks for Semantic Segmentation of Colorectal Polyps
- Affinity Attention Graph Neural Network for Weakly Supervised Semantic Segmentation
- Semi-Supervised Deep Learning for Fully Convolutional Networks
- VoxResNet: Deep Voxelwise Residual Networks for Volumetric Brain Segmentation
- H-DenseUNet: Hybrid Densely Connected UNet for Liver and Tumor Segmentation from CT Volumes
- 2D-Densely Connected Convolution Neural Networks for automatic Liver and Tumor Segmentation
- Evaluation of Multi-Slice Inputs to Convolutional Neural Networks for Medical Image Segmentation
- Factorised spatial representation learning: application in semi-supervised myocardial segmentation
- Hybrid Cascaded Neural Network for Liver Lesion Segmentation
- Bayesian Optimization with Unknown Search Space
- Combining Shape Priors with Conditional Adversarial Networks for Improved Scapula Segmentation in MR images
- Learning Based Segmentation of CT Brain Images: Application to Post-Operative Hydrocephalic Scans
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- BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once
- MMGL: Multi-Scale Multi-View Global-Local Contrastive learning for Semi-supervised Cardiac Image Segmentation
- GLIMS: Attention-Guided Lightweight Multi-Scale Hybrid Network for Volumetric Semantic Segmentation
- HST-MRF: Heterogeneous Swin Transformer with Multi-Receptive Field for Medical Image Segmentation
- Defining the boundaries: challenges and advances in identifying cells in microscopy images
- Weakly Supervised Intracranial Hemorrhage Segmentation using Head-Wise Gradient-Infused Self-Attention Maps from a Swin Transformer in Categorical Learning
- Neural Network Methods for Radiation Detectors and Imaging
- Leveraging Labelled Data Knowledge: A Cooperative Rectification Learning Network for Semi-supervised 3D Medical Image Segmentation
- Advances in Medical Image Segmentation: A Comprehensive Survey with a Focus on Lumbar Spine Applications
- Fully automated workflow for designing patient-specific orthopaedic implants: application to total knee arthroplasty
- BC-MRI-SEG: A Breast Cancer MRI Tumor Segmentation Benchmark
- Masked LoGoNet: Fast and Accurate 3D Image Analysis for Medical Domain
- DualSwinUnet++: An Enhanced Swin-Unet Architecture With Dual Decoders For PTMC Segmentation
- GLoG-CSUnet: Enhancing Vision Transformers with Adaptable Radiomic Features for Medical Image Segmentation
- Meta-learners for few-shot weakly-supervised optic disc and cup segmentation on fundus images
- ActiveFreq: Integrating Active Learning and Frequency Domain Analysis for Interactive Segmentation