ML Models of Vibrating HCO: Comparing Reproducing Kernels, FCHL and PhysNet
arXiv:2006.16752 · doi:10.1021/acs.jpca.0c05979
Abstract
Machine Learning (ML) has become a promising tool for improving the quality of atomistic simulations. Using formaldehyde as a benchmark system for intramolecular interactions, a comparative assessment of ML models based on state-of-the-art variants of deep neural networks (NN), reproducing kernel Hilbert space (RKHS+F), and kernel ridge regression (KRR) is presented. Learning curves for energies and atomic forces indicate rapid convergence towards excellent predictions for B3LYP, MP2, and CCSD(T)-F12 reference results for modestly sized (in the hundreds) training sets. Typically, learning curve off-sets decay as one goes from NN (PhysNet) to RKHS+F to KRR (FCHL). Conversely, the predictive power for extrapolation of energies towards new geometries increases in the same order with RKHS+F and FCHL performing almost equally. For harmonic vibrational frequencies, the picture is less clear, with PhysNet and FCHL yielding respectively flat learning at 1 and 0.2 cm no matter which reference method, while RKHS+F models level off for B3LYP, and exhibit continued improvements for MP2 and CCSD(T)-F12. Finite-temperature molecular dynamics (MD) simulations with the same initial conditions yield indistinguishable infrared spectra with good performance compared with experiment except for the high-frequency modes involving hydrogen stretch motion which is a known limitation of MD for vibrational spectroscopy. For sufficiently large training set sizes all three models can detect insufficient convergence (``noise'') of the reference electronic structure calculations in that the learning curves level off. Transfer learning (TL) from B3LYP to CCSD(T)-F12 with PhysNet indicates that additional improvements in data efficiency can be achieved.
References in corpus (19)
- Neural Message Passing for Quantum Chemistry
- Gaussian Approximation Potentials: the accuracy of quantum mechanics, without the electrons
- PhysNet: A Neural Network for Predicting Energies, Forces, Dipole Moments and Partial Charges
- Big Data meets Quantum Chemistry Approximations: The -Machine Learning Approach
- W4 theory for computational thermochemistry: in pursuit of confident sub-kJ/mol predictions
- Machine learning prediction errors better than DFT accuracy
- ANI-1: A data set of 20M off-equilibrium DFT calculations for organic molecules
- FCHL revisited: faster and more accurate quantum machine learning
- Alchemical and structural distribution based representation for improved QML
- Comparison of permutationally invariant polynomials, neural networks, and Gaussian approximation potentials in representing water interactions through many-body expansions
- Operators in Machine Learning: Response Properties in Chemical Space
- Reactive Dynamics and Spectroscopy of Hydrogen Transfer from Neural Network-Based Reactive Potential Energy Surfaces
- Permutationally Invariant, Reproducing Kernel-Based Potential Energy Surfaces for Polyatomic Molecules: From Formaldehyde to Acetone
- The Reaction: Thermal and Vibrational Relaxation Rates for the A, A and A States
- Accurate Reproducing Kernel-Based Potential Energy Surfaces for the Triplet Ground States of NO and Dynamics for the N+NOO+N and N+O2N+O Reactions
- Near dissociation states for H-He on MRCI and FCI potential energy surfaces
- Perspective: Non-conventional Force Fields for Applications in Spectroscopy and Chemical Reaction Dynamics
- Impact of non-normal error distributions on the benchmarking and ranking of Quantum Machine Learning models
- Isomerization and Decomposition Reactions of Acetaldehyde Relevant to Atmospheric Processes from Dynamics Simulations on Neural Network-Based Potential Energy Surfaces
Cited by in corpus (10)
- Perspective on integrating machine learning into computational chemistry and materials science
- Representations of molecules and materials for interpolation of quantum-mechanical simulations via machine learning
- Permutationally Invariant, Reproducing Kernel-Based Potential Energy Surfaces for Polyatomic Molecules: From Formaldehyde to Acetone
- Transfer learning for chemically accurate interatomic neural network potentials
- Impact of the characteristics of quantum chemical databases on machine learning predictions of tautomerization energies
- Transformative Applications of Machine Learning for Chemical Reactions
- Ab initio machine learning in chemical compound space
- Transfer Learned Potential Energy Surfaces: Accurate Anharmonic Vibrational Dynamics and Dissociation Energies for the Formic Acid Monomer and Dimer
- Machine-Learned Potentials for Solvation Modeling
- Quantitative Molecular Simulations