Faster STR-EC-LCS Computation

Abstract

The longest common subsequence (LCS) problem is a central problem in stringology that finds the longest common subsequence of given two strings $A$ and $B$. More recently, a set of four constrained LCS problems (called generalized constrained LCS problem) were proposed by Chen and Chao [J. Comb. Optim, 2011]. In this paper, we consider the substring-excluding constrained LCS (STR-EC-LCS) problem. A string $Z$ is said to be an STR-EC-LCS of two given strings $A$ and $B$ excluding $P$ if, $Z$ is one of the longest common subsequences of $A$ and $B$ that does not contain $P$ as a substring. Wang et al. proposed a dynamic programming solution which computes an STR-EC-LCS in $O(mnr)$ time and space where $m=|A|,n=|B|,r=|P|$ [Inf. Process. Lett., 2013]. In this paper, we show a new solution for the STR-EC-LCS problem. Our algorithm computes an STR-EC-LCS in $O(n|\Sigma |+(L+1)(m-L+1)r)$ time where $|\Sigma |\le \min \{m,n\}$ denotes the set of distinct characters occurring in both $A$ and $B$, and $L$ is the length of the STR-EC-LCS. This algorithm is faster than the $O(mnr)$-time algorithm for short/long STR-EC-LCS (namely, $L\in O(1)$ or $m-L\in O(1)$), and is at least as efficient as the $O(mnr)$-time algorithm for all cases.

References in corpus (1)

• A Simple Algorithm for the Constrained Sequence Problems