Statistical physics and mesoscopic modeling to interpret tethered particle motion experiments
arXiv:1909.01429 · doi:10.1016/j.ymeth.2019.07.006
Abstract
Tethered particle motion experiments are versatile single-molecule techniques enabling one to address in vitro the molecular properties of DNA and its interactions with various partners involved in genetic regulations. These techniques provide raw data such as the tracked particle amplitude of movement, from which relevant information about DNA conformations or states must be recovered. Solving this inverse problem appeals to specific theoretical tools that have been designed in the two last decades, together with the data pre-processing procedures that ought to be implemented to avoid biases inherent to these experimental techniques. These statistical tools and models are reviewed in this paper.
review article
References in corpus (9)
- Stepwise bending of DNA by a single TATA-box Binding Protein
- DNA Looping Kinetics Analyzed Using Diffusive Hidden Markov Model
- Thermal denaturation of fluctuating finite DNA chains: the role of bending rigidity in bubble nucleation
- Reconstructing the free energy landscape of a polyprotein by single-molecule experiments
- Thermal Denaturation of Fluctuating DNA Driven by Bending Entropy
- Bending stiff charged polymers: the electrostatic persistence length
- Mesoscopic models for DNA stretching under force: new results and comparison to experiments
- Diffusive hidden Markov model characterization of DNA looping dynamics in tethered particle experiments
- First-principles calculation of DNA looping in tethered particle experiments